Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| CC_0609 | CC_0610 | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | Nitrate ABC transporter, permease protein; Identified by match to protein family HMM. | 0.998 |
| CC_0609 | CC_0611 | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM. | 0.999 |
| CC_0609 | CC_0615 | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.649 |
| CC_0609 | CC_0616 | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM. | 0.525 |
| CC_0609 | CC_0617 | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.987 |
| CC_0610 | CC_0609 | Nitrate ABC transporter, permease protein; Identified by match to protein family HMM. | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | 0.998 |
| CC_0610 | CC_0611 | Nitrate ABC transporter, permease protein; Identified by match to protein family HMM. | Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM. | 0.997 |
| CC_0610 | CC_0617 | Nitrate ABC transporter, permease protein; Identified by match to protein family HMM. | NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.970 |
| CC_0611 | CC_0609 | Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM. | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | 0.999 |
| CC_0611 | CC_0610 | Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM. | Nitrate ABC transporter, permease protein; Identified by match to protein family HMM. | 0.997 |
| CC_0611 | CC_0617 | Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM. | NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.977 |
| CC_0614 | CC_0615 | Nitrate transporter, NarK/NasA family; Identified by match to protein family HMM. | Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.992 |
| CC_0614 | CC_0616 | Nitrate transporter, NarK/NasA family; Identified by match to protein family HMM. | Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM. | 0.990 |
| CC_0614 | CC_0617 | Nitrate transporter, NarK/NasA family; Identified by match to protein family HMM. | NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.990 |
| CC_0614 | CC_3525 | Nitrate transporter, NarK/NasA family; Identified by match to protein family HMM. | Ferredoxin reductase; Identified by match to protein family HMM. | 0.465 |
| CC_0615 | CC_0609 | Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | 0.649 |
| CC_0615 | CC_0614 | Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrate transporter, NarK/NasA family; Identified by match to protein family HMM. | 0.992 |
| CC_0615 | CC_0616 | Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM. | 0.999 |
| CC_0615 | CC_0617 | Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. | 0.999 |
| CC_0616 | CC_0609 | Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM. | Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative. | 0.525 |
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