Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
CC_0617NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (892 aa)    
Predicted Functional Partners:
CC_0615
Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
 0.999
CC_0616
Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM.
 
 
 0.996
CC_0614
Nitrate transporter, NarK/NasA family; Identified by match to protein family HMM.
 
 
 0.991
CC_0609
Nitrate ABC transporter, periplasmic nitrate-binding protein; Similar to PID:1652571; identified by sequence similarity; putative.
 
 
 0.988
CC_0611
Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
 
  
 0.979
CC_0610
Nitrate ABC transporter, permease protein; Identified by match to protein family HMM.
 
  
 0.973
CC_3525
Ferredoxin reductase; Identified by match to protein family HMM.
  
 0.966
CC_3063
Sulfite reductase (NADPH) flavoprotein alpha-component; Identified by match to protein family HMM.
 
  
 0.952
CC_3606
Glutamate synthase, small subunit; Identified by match to protein family HMM.
    
 0.949
CC_1947
NADH dehydrogenase I, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
  
 
 0.934
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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