STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0618Siroheme synthase; Identified by match to PFAM protein family HMM PF00590. (261 aa)    
Predicted Functional Partners:
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.986
CC_0024
Siroheme synthase-related protein; Similar to SP:P11098 GB:X14202 PID:581142 PID:606302 GB:U00096; identified by sequence similarity; putative.
 
 
 0.983
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen III to yield coproporphyrinogen III.
    
 0.913
CC_1118
Sirohaem synthase; Identified by match to PFAM protein family HMM PF00590.
  
  
 
0.910
CC_0616
Nitrite reductase [NAD(P)H], small subunit; Identified by match to protein family HMM.
  
  
 0.871
CC_0615
Nitrite reductase [NAD(P)H], large subunit; Identified by match to protein family HMM; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.865
CC_1347
Delta-aminolevulinic acid dehydratase; Identified by match to PFAM protein family HMM PF00490; Belongs to the ALAD family.
 
  
 0.865
CC_1119
Sulfite reductase (NADPH) hemoprotein beta-component; Identified by match to protein family HMM.
 
  
 0.842
CC_0617
NasA/NapA/NarB nitrate reductase, large subunit family protein; Identified by match to PFAM protein family HMM PF00384; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.840
CC_1121
Phospho-adenylylsulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily.
 
  
 0.827
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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