STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0634ABC transporter, ATP-binding subunit; Identified by match to protein family HMM. (250 aa)    
Predicted Functional Partners:
CC_0635
ABC-2 type transporter; Identified by match to PFAM protein family HMM PF01061.
 
 0.999
CC_0633
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.861
CC_0632
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.816
CC_0631
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.782
CC_0169
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.704
hfsD
HfsD; Identified by Glimmer2; putative.
  
  
 0.704
CC_3632
Identified by match to protein family HMM.
 
  
 0.640
CC_0830
Identified by match to protein family HMM.
   
    0.628
CC_0465
Identified by match to protein family HMM.
 
  
 0.582
CC_2077
Identified by match to protein family HMM.
 
  
 0.572
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.