STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0644Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM. (245 aa)    
Predicted Functional Partners:
CC_0643
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.928
CC_3380
2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM.
  
     0.679
CC_2655
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
  
    0.667
CC_0094
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by match to protein family HMM.
  
     0.627
CC_0645
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.590
CC_1172
Identified by match to protein family HMM.
  
 
 0.544
CC_2836
3-oxoacyl-(acyl-carrier protein) reductase; Identified by match to protein family HMM.
  
     0.521
CC_2132
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.488
CC_0246
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase; Identified by match to protein family HMM.
  
     0.474
CC_0978
alpha-L-rhamnosidase, putative; Similar to GP:5763989; identified by sequence similarity; putative.
   
 
 0.464
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.