STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdxAIdentified by match to protein family HMM. (113 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.906
cysC
Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.792
ilvR
Isoleucine biosynthesis transcriptional activator; Positively regulates the expression of the ilvD gene while negatively autoregulating its own expression.
      
 0.756
CC_3176
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by match to PFAM protein family HMM PF01558.
  
  
 0.642
CC_3606
Glutamate synthase, small subunit; Identified by match to protein family HMM.
  
 
 0.625
ilvD
Dihydroxy-acid dehydratase; Identified by match to TIGR protein family HMM TIGR00110.
      
 0.529
SdhA
Succinate dehydrogenase, flavoprotein subunit; Identified by match to protein family HMM; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
  
 0.500
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen III to yield coproporphyrinogen III.
      
 0.479
CC_0653
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.474
CC_0655
Identified by match to protein family HMM.
       0.440
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.