STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0682Hypothetical protein; Identified by Glimmer2; putative. (55 aa)    
Predicted Functional Partners:
CC_0681
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.605
CC_0029
Efflux protein, LysE family; Identified by match to protein family HMM.
      
 0.513
CC_0179
General secretion pathway protein J; Similar to SP:P31589 PID:42192; identified by sequence similarity; putative.
      
 0.513
CC_0228
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.513
CC_1362
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.513
CC_2367
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.513
CC_3208
ferredoxin-NADP reductase; Identified by match to protein family HMM.
      
 0.481
CC_2193
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.478
thiE
Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family.
      
 0.463
CC_0683
Identified by match to protein family HMM.
       0.446
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.