CC_0683 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0683

Identified by match to protein family HMM. (378 aa)

Predicted Functional Partners:

CC_0684

0.995

CC_1785

0.602

CC_2610

0.581

CC_3692

0.572

CC_1015

0.567

CC_1318

0.559

CC_0806

0.543

CC_2388

0.543

CC_2721

0.543

CC_3195

0.543

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0683	CC_0684	Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.995
CC_0683	CC_0806	Identified by match to protein family HMM.	Efflux system protein; Similar to GB:L23839 PID:404773 PID:833173; identified by sequence similarity; putative.	0.543
CC_0683	CC_1015	Identified by match to protein family HMM.	Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative.	0.567
CC_0683	CC_1318	Identified by match to protein family HMM.	Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.	0.559
CC_0683	CC_1785	Identified by match to protein family HMM.	Efflux system protein; Similar to PID:1707646; identified by sequence similarity; putative.	0.602
CC_0683	CC_2388	Identified by match to protein family HMM.	Metal ion efflux outer membrane factor protein family; Similar to SP:P13509; identified by sequence similarity; putative.	0.543
CC_0683	CC_2610	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00353.	0.581
CC_0683	CC_2721	Identified by match to protein family HMM.	Metal ion efflux outer membrane factor protein family; Identified by match to protein family HMM.	0.543
CC_0683	CC_3195	Identified by match to protein family HMM.	Efflux system protein; Similar to PID:1707646; identified by sequence similarity; putative.	0.543
CC_0683	CC_3692	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.572
CC_0684	CC_0683	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.995
CC_0684	CC_1015	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative.	0.569
CC_0684	CC_1318	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.	0.561
CC_0684	CC_2610	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00353.	0.705
CC_0806	CC_0683	Efflux system protein; Similar to GB:L23839 PID:404773 PID:833173; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.543
CC_0806	CC_1318	Efflux system protein; Similar to GB:L23839 PID:404773 PID:833173; identified by sequence similarity; putative.	Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.	0.911
CC_1015	CC_0683	Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.567
CC_1015	CC_0684	Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.569
CC_1015	CC_2610	Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative.	Identified by match to PFAM protein family HMM PF00353.	0.472
CC_1318	CC_0683	Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.559