CC_0684 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CC_0684

ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM. (726 aa)

Predicted Functional Partners:

CC_0683

0.995

pstB

0.905

CC_1009

0.871

CC_0681

0.836

CC_2610

0.768

CC_2092

0.706

CC_0305

0.697

CC_3714

0.690

CC_3274

0.647

CC_3420

0.647

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0305	CC_0684	CC_0305	CC_0684	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.697
CC_0681	CC_0684	CC_0681	CC_0684	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.836
CC_0683	CC_0684	CC_0683	CC_0684	Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.995
CC_0683	CC_1009	CC_0683	CC_1009	Identified by match to protein family HMM.	RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM.	0.531
CC_0683	CC_2610	CC_0683	CC_2610	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00353.	0.575
CC_0684	CC_0305	CC_0684	CC_0305	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.697
CC_0684	CC_0681	CC_0684	CC_0681	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.836
CC_0684	CC_0683	CC_0684	CC_0683	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.995
CC_0684	CC_1009	CC_0684	CC_1009	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM.	0.871
CC_0684	CC_2092	CC_0684	CC_2092	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.706
CC_0684	CC_2610	CC_0684	CC_2610	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00353.	0.768
CC_0684	CC_3274	CC_0684	CC_3274	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.647
CC_0684	CC_3420	CC_0684	CC_3420	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.647
CC_0684	CC_3714	CC_0684	CC_3714	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.690
CC_0684	pstB	CC_0684	CC_0292	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.	0.905
CC_1009	CC_0683	CC_1009	CC_0683	RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.531
CC_1009	CC_0684	CC_1009	CC_0684	RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.871
CC_1009	CC_2610	CC_1009	CC_2610	RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00353.	0.750
CC_2092	CC_0684	CC_2092	CC_0684	Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.706
CC_2610	CC_0683	CC_2610	CC_0683	Identified by match to PFAM protein family HMM PF00353.	Identified by match to protein family HMM.	0.575