CC_0704 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0704

Identified by match to protein family HMM. (152 aa)

Predicted Functional Partners:

CC_0511

0.960

CC_0076

0.952

CC_1814

0.937

CC_0353

0.935

CC_1352

0.935

CC_1723

0.933

CC_1380

0.931

CC_3085

0.912

CC_3498

0.906

CC_0705

0.877

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0076	CC_0353	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.951
CC_0076	CC_0511	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	acetoacetyl-CoA reductase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.928
CC_0076	CC_0704	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to protein family HMM.	0.952
CC_0076	CC_1352	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.925
CC_0076	CC_1380	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Poly-beta-hydroxybutyrate polymerase; Identified by match to protein family HMM.	0.934
CC_0076	CC_1723	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.928
CC_0076	CC_1814	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.948
CC_0076	CC_3498	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	Identified by match to protein family HMM.	0.952
CC_0353	CC_0076	Identified by match to PFAM protein family HMM PF00378.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.951
CC_0353	CC_0704	Identified by match to PFAM protein family HMM PF00378.	Identified by match to protein family HMM.	0.935
CC_0353	CC_1352	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.619
CC_0353	CC_1723	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.537
CC_0353	CC_3498	Identified by match to PFAM protein family HMM PF00378.	Identified by match to protein family HMM.	0.934
CC_0511	CC_0076	acetoacetyl-CoA reductase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.928
CC_0511	CC_0704	acetoacetyl-CoA reductase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Identified by match to protein family HMM.	0.960
CC_0511	CC_1380	acetoacetyl-CoA reductase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Poly-beta-hydroxybutyrate polymerase; Identified by match to protein family HMM.	0.958
CC_0511	CC_3498	acetoacetyl-CoA reductase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Identified by match to protein family HMM.	0.924
CC_0704	CC_0076	Identified by match to protein family HMM.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.952
CC_0704	CC_0353	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00378.	0.935
CC_0704	CC_0511	Identified by match to protein family HMM.	acetoacetyl-CoA reductase; Identified by match to protein family HMM; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.960