STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0705Conserved hypothetical protein; Identified by Glimmer2; putative. (317 aa)    
Predicted Functional Partners:
CC_0704
Identified by match to protein family HMM.
 
    0.877
CC_0703
Riboflavin biosynthesis protein RibF; Identified by match to TIGR protein family HMM TIGR00083; Belongs to the ribF family.
       0.759
CC_1451
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.725
hisS
histidyl-tRNA synthetase; Identified by match to TIGR protein family HMM TIGR00442.
 
    0.636
CC_0706
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.559
CC_2237
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.550
CC_2932
Sensor histidine kinase; Identified by match to protein family HMM.
  
 
   0.543
atpF
ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
  
 0.534
CC_0520
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.519
CC_2349
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.478
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.