STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0705Conserved hypothetical protein; Identified by Glimmer2; putative. (317 aa)    
Predicted Functional Partners:
CC_0704
Identified by match to protein family HMM.
 
    0.877
CC_3721
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.808
CC_1451
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.747
CC_0703
Riboflavin biosynthesis protein RibF; Identified by match to TIGR protein family HMM TIGR00083; Belongs to the ribF family.
  
    0.740
yacG
Conserved hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
   
  
 0.736
nadE
NAD(+) synthetase, putative; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
  
 0.735
CC_2963
Hydrolase, carbon-nitrogen family; Identified by match to PFAM protein family HMM PF00795.
      
 0.730
CC_3460
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.730
CC_3013
TonB-dependent receptor; Identified by match to protein family HMM.
      
 0.723
hisS
histidyl-tRNA synthetase; Identified by match to TIGR protein family HMM TIGR00442.
 
    0.650
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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