STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0714Membrane protein, putative; Similar to SP:P25747 GB:X62529 PID:405874 GB:U00096 PID:1788475; identified by sequence similarity; putative. (438 aa)    
Predicted Functional Partners:
CC_0713
Transcriptional regulator, AraC family; Identified by match to protein family HMM.
       0.598
CC_0715
3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.
  
    0.580
CC_2488
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.506
CC_1079
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.498
CC_1345
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
  
    0.443
CC_3279
ABC transporter protein, putative; Similar to GP:4467370; identified by sequence similarity; putative.
  
    0.437
CC_0335
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.433
CC_2821
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.432
CC_0224
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.428
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.