CC_0722 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0722

TonB-dependent receptor; Identified by match to protein family HMM. (824 aa)

Predicted Functional Partners:

CC_3051

0.739

CC_1167

0.684

CC_2327

0.625

CC_1166

0.619

CC_2925

0.604

CC_1666

0.589

CC_1089

0.586

CC_1163

0.562

CC_1093

0.559

CC_0757

0.544

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0722	CC_0757	TonB-dependent receptor; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.544
CC_0722	CC_1089	TonB-dependent receptor; Identified by match to protein family HMM.	Transcriptional regulator, putative; Identified by match to protein family HMM.	0.586
CC_0722	CC_1093	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor, putative; Similar to GP:9107270; identified by sequence similarity; putative.	0.559
CC_0722	CC_1163	TonB-dependent receptor; Identified by match to protein family HMM.	Acyl carrier protein, putative; Identified by match to PFAM protein family HMM PF00550.	0.562
CC_0722	CC_1166	TonB-dependent receptor; Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.619
CC_0722	CC_1167	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.684
CC_0722	CC_1666	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.589
CC_0722	CC_2327	TonB-dependent receptor; Identified by match to protein family HMM.	TonB protein, putative; Similar to SP:O34261; identified by sequence similarity; putative.	0.625
CC_0722	CC_2925	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.604
CC_0722	CC_3051	TonB-dependent receptor; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.739
CC_0757	CC_0722	Conserved hypothetical protein; Identified by Glimmer2; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.544
CC_0757	CC_1163	Conserved hypothetical protein; Identified by Glimmer2; putative.	Acyl carrier protein, putative; Identified by match to PFAM protein family HMM PF00550.	0.774
CC_0757	CC_1166	Conserved hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.772
CC_0757	CC_1167	Conserved hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.713
CC_1089	CC_0722	Transcriptional regulator, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.586
CC_1089	CC_1093	Transcriptional regulator, putative; Identified by match to protein family HMM.	TonB-dependent receptor, putative; Similar to GP:9107270; identified by sequence similarity; putative.	0.418
CC_1093	CC_0722	TonB-dependent receptor, putative; Similar to GP:9107270; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.559
CC_1093	CC_1089	TonB-dependent receptor, putative; Similar to GP:9107270; identified by sequence similarity; putative.	Transcriptional regulator, putative; Identified by match to protein family HMM.	0.418
CC_1163	CC_0722	Acyl carrier protein, putative; Identified by match to PFAM protein family HMM PF00550.	TonB-dependent receptor; Identified by match to protein family HMM.	0.562
CC_1163	CC_0757	Acyl carrier protein, putative; Identified by match to PFAM protein family HMM PF00550.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.774