STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0738Aminotransferase, class I; Identified by match to protein family HMM. (385 aa)    
Predicted Functional Partners:
CC_2618
Xanthine dehydrogenase, C-terminal subunit; Identified by match to PFAM protein family HMM PF01315.
 
 
  
 0.726
CC_0739
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.582
CC_3549
NADP-dependent malic enzyme; Identified by match to PFAM protein family HMM PF01515.
  
 
 0.509
CC_2622
NADP-dependent malic enzyme; Identified by match to PFAM protein family HMM PF01515.
  
 
 0.507
CC_3607
Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645.
  
  
 0.485
acsA
acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.460
CC_2933
Prephenate dehydratase; Identified by match to PFAM protein family HMM PF00800.
 
  
 0.448
CC_0205
NADP(H) oxidoreductase; Similar to GP:5019382; identified by sequence similarity; putative.
   
    0.435
CC_0277
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.435
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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