CC_0740 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0740

Identified by match to protein family HMM. (842 aa)

Predicted Functional Partners:

CC_0710

0.768

CC_2670

0.671

CC_0741

0.608

CC_3396

0.608

lovK

0.576

CC_2971

0.538

CC_1850

0.504

CC_1086

0.474

CC_3285

0.465

CC_1338

0.464

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0710	CC_0740	CC_0710	CC_0740	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.768
CC_0710	CC_1850	CC_0710	CC_1850	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.991
CC_0710	CC_2670	CC_0710	CC_2670	Hypothetical protein; Identified by Glimmer2; putative.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.654
CC_0710	CC_2971	CC_0710	CC_2971	Hypothetical protein; Identified by Glimmer2; putative.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.654
CC_0710	CC_3285	CC_0710	CC_3285	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.801
CC_0710	CC_3396	CC_0710	CC_3396	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.916
CC_0740	CC_0710	CC_0740	CC_0710	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.768
CC_0740	CC_0741	CC_0740	CC_0741	Identified by match to protein family HMM.	Elongation factor Tu family protein; Identified by match to protein family HMM.	0.608
CC_0740	CC_1086	CC_0740	CC_1086	Identified by match to protein family HMM.	Sensory box protein; Identified by match to protein family HMM.	0.474
CC_0740	CC_1338	CC_0740	CC_1338	Identified by match to protein family HMM.	Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836.	0.464
CC_0740	CC_1850	CC_0740	CC_1850	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.504
CC_0740	CC_2670	CC_0740	CC_2670	Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.671
CC_0740	CC_2971	CC_0740	CC_2971	Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.538
CC_0740	CC_3285	CC_0740	CC_3285	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.465
CC_0740	CC_3396	CC_0740	CC_3396	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.608
CC_0740	lovK	CC_0740	CC_0285	Identified by match to protein family HMM.	LOV histidine kinase LovK; Identified by match to protein family HMM.	0.576
CC_0741	CC_0740	CC_0741	CC_0740	Elongation factor Tu family protein; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.608
CC_1086	CC_0740	CC_1086	CC_0740	Sensory box protein; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.474
CC_1086	CC_1850	CC_1086	CC_1850	Sensory box protein; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.922
CC_1086	CC_2670	CC_1086	CC_2670	Sensory box protein; Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.694