STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0760ABC transporter, ATP-binding protein Cydc; Identified by match to protein family HMM. (532 aa)    
Predicted Functional Partners:
CC_0761
ABC transporter, ATP-binding protein CydD; Identified by match to protein family HMM.
 
0.999
CC_0763
Cytochrome d ubiquinol oxidase subunit II; Identified by match to TIGR protein family HMM TIGR00203.
 
  
 0.976
CC_0762
Cytochrome d ubiquinol oxidase subunit I; Identified by match to PFAM protein family HMM PF01654.
  
 0.957
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
      0.692
FixL
Sensory box histidine kinase FixL; Identified by match to protein family HMM.
       0.447
CC_1193
Iron compound ABC transporter, ATP-binding protein; Identified by match to protein family HMM.
  
     0.447
FixJ
DNA-binding response regulator, LuxR family; Identified by match to protein family HMM.
       0.445
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
   
0.427
lolD2
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
    0.418
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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