STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0761ABC transporter, ATP-binding protein CydD; Identified by match to protein family HMM. (546 aa)    
Predicted Functional Partners:
CC_0760
ABC transporter, ATP-binding protein Cydc; Identified by match to protein family HMM.
 
0.999
CC_0763
Cytochrome d ubiquinol oxidase subunit II; Identified by match to TIGR protein family HMM TIGR00203.
 
  
 0.989
CC_0762
Cytochrome d ubiquinol oxidase subunit I; Identified by match to PFAM protein family HMM PF01654.
  
 0.985
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
   
0.908
potA
Spermidine/putrescine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
     
0.844
cysA
Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
     
0.824
CC_1439
Cystine ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM.
 
     
0.739
CC_0449
PTS system, N-acetylglucosamine-specific IIABC component; Identified by match to protein family HMM.
  
   
 0.448
CC_0538
PTS system, N-acetylglucosamine-specific IIABC component; Identified by match to protein family HMM.
  
   
 0.447
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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