CC_0764 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CC_0764

Chemotaxis protein CheW; Identified by match to protein family HMM. (150 aa)

Predicted Functional Partners:

CC_0433

0.991

CC_0594

0.984

CC_3145

0.971

cheB1

0.964

CC_0595

0.963

CC_3349

0.963

CC_0343

0.960

mcpA

0.960

CC_2317

0.960

CC_0066

0.959

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0066	CC_0433	CC_0066	CC_0433	Methyl-accepting chemotaxis protein McpQ; Identified by match to protein family HMM.	Chemotaxis protein CheA; Identified by match to protein family HMM.	0.976
CC_0066	CC_0594	CC_0066	CC_0594	Methyl-accepting chemotaxis protein McpQ; Identified by match to protein family HMM.	Chemotaxis protein CheA; Identified by match to protein family HMM.	0.946
CC_0066	CC_0595	CC_0066	CC_0595	Methyl-accepting chemotaxis protein McpQ; Identified by match to protein family HMM.	Chemotaxis protein CheW; Identified by match to protein family HMM.	0.867
CC_0066	CC_0764	CC_0066	CC_0764	Methyl-accepting chemotaxis protein McpQ; Identified by match to protein family HMM.	Chemotaxis protein CheW; Identified by match to protein family HMM.	0.959
CC_0066	cheB1	CC_0066	CC_0436	Methyl-accepting chemotaxis protein McpQ; Identified by match to protein family HMM.	Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.938
CC_0343	CC_0433	CC_0343	CC_0433	Methyl-accepting chemotaxis protein McpC; Identified by match to protein family HMM.	Chemotaxis protein CheA; Identified by match to protein family HMM.	0.976
CC_0343	CC_0594	CC_0343	CC_0594	Methyl-accepting chemotaxis protein McpC; Identified by match to protein family HMM.	Chemotaxis protein CheA; Identified by match to protein family HMM.	0.938
CC_0343	CC_0595	CC_0343	CC_0595	Methyl-accepting chemotaxis protein McpC; Identified by match to protein family HMM.	Chemotaxis protein CheW; Identified by match to protein family HMM.	0.862
CC_0343	CC_0764	CC_0343	CC_0764	Methyl-accepting chemotaxis protein McpC; Identified by match to protein family HMM.	Chemotaxis protein CheW; Identified by match to protein family HMM.	0.960
CC_0343	cheB1	CC_0343	CC_0436	Methyl-accepting chemotaxis protein McpC; Identified by match to protein family HMM.	Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.938
CC_0433	CC_0066	CC_0433	CC_0066	Chemotaxis protein CheA; Identified by match to protein family HMM.	Methyl-accepting chemotaxis protein McpQ; Identified by match to protein family HMM.	0.976
CC_0433	CC_0343	CC_0433	CC_0343	Chemotaxis protein CheA; Identified by match to protein family HMM.	Methyl-accepting chemotaxis protein McpC; Identified by match to protein family HMM.	0.976
CC_0433	CC_0594	CC_0433	CC_0594	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein CheA; Identified by match to protein family HMM.	0.941
CC_0433	CC_0595	CC_0433	CC_0595	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein CheW; Identified by match to protein family HMM.	0.980
CC_0433	CC_0764	CC_0433	CC_0764	Chemotaxis protein CheA; Identified by match to protein family HMM.	Chemotaxis protein CheW; Identified by match to protein family HMM.	0.991
CC_0433	CC_2317	CC_0433	CC_2317	Chemotaxis protein CheA; Identified by match to protein family HMM.	Methyl-accepting chemotaxis protein McpM; Identified by match to protein family HMM.	0.977
CC_0433	CC_3145	CC_0433	CC_3145	Chemotaxis protein CheA; Identified by match to protein family HMM.	Methyl-accepting chemotaxis protein McpJ; Identified by match to protein family HMM.	0.986
CC_0433	CC_3349	CC_0433	CC_3349	Chemotaxis protein CheA; Identified by match to protein family HMM.	Methyl-accepting chemotaxis protein McpH; Identified by match to protein family HMM.	0.979
CC_0433	cheB1	CC_0433	CC_0436	Chemotaxis protein CheA; Identified by match to protein family HMM.	Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.	0.999
CC_0433	mcpA	CC_0433	CC_0430	Chemotaxis protein CheA; Identified by match to protein family HMM.	Methyl-accepting chemotaxis protein McpA; Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of methylation. Attractants increase the level of methylation while repellents decrease the level of methylation.	0.989