Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0785Conserved hypothetical protein; Identified by Glimmer2; putative. (306 aa)    
Predicted Functional Partners:
CC_0784
4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Identified by match to protein family HMM.
 
 0.997
CC_0783
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
 0.714
CC_0967
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM.
 
   
 0.651
CC_1421
Dehydratase, IlvD/Edd family; Identified by match to PFAM protein family HMM PF00920; Belongs to the IlvD/Edd family.
 
   
 0.586
xylD
Dehydratase, IlvD/Edd family; Catalyzes the dehydration of D-xylonate to 2-dehydro-3-deoxy- D-arabinonate during D-xylose degradation. Can also dehydrate D- gluconate, with similar catalytic efficiency. Has weak activity with D- galactonate, D-fuconate and L-arabinonate.
 
   
 0.573
CC_1420
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
 0.539
CC_1419
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.512
CC_0820
Smp-30/Cgr1 family protein; Similar to GB:AL009126; identified by sequence similarity; putative.
 
     0.479
CC_0532
Mandelate racemase/muconate lactonizing enzyme family; Catalyzes the dehydration of D-mannonate. Has no detectable activity with a panel of 70 other acid sugars (in vitro).
 
  
 0.444
CC_2812
Mandelate racemase / muconate lactonizing enzyme family; Catalyzes the dehydration of D-mannonate. Has no detectable activity with a panel of 70 other acid sugars (in vitro).
 
  
 0.443
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.