STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0785Conserved hypothetical protein; Identified by Glimmer2; putative. (306 aa)    
Predicted Functional Partners:
CC_0784
4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase; Identified by match to protein family HMM.
  
 0.997
CC_0783
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
 0.716
CC_0967
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM.
 
     0.588
CC_1421
Dehydratase, IlvD/Edd family; Identified by match to PFAM protein family HMM PF00920; Belongs to the IlvD/Edd family.
 
   
 0.582
xylD
Dehydratase, IlvD/Edd family; Catalyzes the dehydration of D-xylonate to 2-dehydro-3-deoxy- D-arabinonate during D-xylose degradation. Can also dehydrate D- gluconate, with similar catalytic efficiency. Has weak activity with D- galactonate, D-fuconate and L-arabinonate.
 
   
 0.569
CC_1420
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
 0.528
CC_0820
Smp-30/Cgr1 family protein; Similar to GB:AL009126; identified by sequence similarity; putative.
 
   
 0.480
CC_1419
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.452
CC_0786
Hypothetical protein; Identified by Glimmer2; putative.
       0.430
CC_0821
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
  
     0.429
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.