STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0790Transcriptional regulator, LysR family; Identified by match to protein family HMM; Belongs to the LysR transcriptional regulatory family. (299 aa)    
Predicted Functional Partners:
ilvR
Isoleucine biosynthesis transcriptional activator; Positively regulates the expression of the ilvD gene while negatively autoregulating its own expression.
  
     0.551
CC_0791
Trp repressor binding protein; Identified by match to protein family HMM.
       0.529
CC_3607
Glutamate synthase, large subunit; Identified by match to PFAM protein family HMM PF01645.
     
 0.524
CC_2517
Transcriptional regulator, LysR family; Identified by match to protein family HMM; Belongs to the LysR transcriptional regulatory family.
  
    0.492
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.449
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.