Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0791Trp repressor binding protein; Identified by match to protein family HMM. (199 aa)    
Predicted Functional Partners:
CC_3370
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.907
ubiE
Ubiquinone/menaquinone biosynthesis methlytransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
CC_2873
Dps family protein; Identified by match to PFAM protein family HMM PF02047; Belongs to the Dps family.
  
  
 0.718
CC_3757
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.596
CC_0790
Transcriptional regulator, LysR family; Identified by match to protein family HMM; Belongs to the LysR transcriptional regulatory family.
       0.529
CC_2772
Identified by match to protein family HMM.
   
 
 0.470
CC_3620
Identified by match to TIGR protein family HMM TIGR00232; Belongs to the transketolase family.
  
  
 0.453
CC_0885
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
 
 0.421
CC_3559
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.421
sodC
Superoxide dismutase, Cu-Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity). May function against extracytoplasmic toxic oxygen species; Belongs to the Cu-Zn superoxide dismutase family.
  
  
 0.410
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (16%) [HD]