Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0795Hypothetical protein; Identified by Glimmer2; putative. (538 aa)    
Predicted Functional Partners:
CC_0978
alpha-L-rhamnosidase, putative; Similar to GP:5763989; identified by sequence similarity; putative.
  
   
 0.768
CC_2357
Beta-xylosidase; Identified by match to protein family HMM.
  
   
 0.763
CC_2550
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.755
CC_0796
Alpha-glucosidase, putative; Similar to PID:1519526; identified by sequence similarity; putative.
 
     0.719
CC_1422
alpha-L-arabinofuranosidase; Similar to GP:3128391; identified by sequence similarity; putative.
  
   
 0.715
CC_0798
Sialic acid-specific 9-O-acetylesterase, putative; Similar to GB:U40408 PID:1373055 PID:1628565 PID:1668766; identified by sequence similarity; putative.
 
     0.712
CC_0533
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.681
CC_1226
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.676
CC_0574
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.663
CC_0572
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.658
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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