Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0799Para-nitrobenzyl esterase; Identified by match to protein family HMM; Belongs to the type-B carboxylesterase/lipase family. (515 aa)    
Predicted Functional Partners:
CC_0813
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the glycosyl hydrolase 43 family.
 
     0.683
CC_2313
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.646
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.577
CC_1226
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.559
CC_1509
2-keto-4-pentenoate hydratase, putative; Identified by match to protein family HMM.
 
     0.545
CC_3107
Peptidase, M20/M25/M40 family; Identified by match to protein family HMM.
 
 0.488
CC_0800
Hypothetical protein; Identified by Glimmer2; putative.
       0.470
CC_0442
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.460
CC_2171
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.436
CC_2035
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.401
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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