STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0830Identified by match to protein family HMM. (265 aa)    
Predicted Functional Partners:
CC_2447
dprA protein; Identified by match to TIGR protein family HMM TIGR00732.
 
 
 0.908
CC_0140
ComM protein; Identified by match to PFAM protein family HMM PF01078.
 
  
 0.863
CC_1904
Identified by match to protein family HMM.
 
  
 0.853
CC_0828
Identified by match to PFAM protein family HMM PF00795.
     
 0.716
CC_0829
Glutaredoxin 3; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.
       0.715
CC_2224
Cyclohexadienyl dehydrogenase; Identified by match to PFAM protein family HMM PF02153.
   
  
 0.683
CC_2059
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.682
CC_0827
Hypothetical protein; Identified by Glimmer2; putative.
       0.676
CC_0634
ABC transporter, ATP-binding subunit; Identified by match to protein family HMM.
   
    0.628
xerC
Integrase/recombinase XerC, putative; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
   
    0.625
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.