STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0833Mutator mutT protein; Identified by match to protein family HMM. (134 aa)    
Predicted Functional Partners:
CC_0832
Hypothetical protein; Identified by Glimmer2; putative.
       0.778
CC_0834
Hypothetical protein; Identified by Glimmer2; putative.
       0.675
CC_3729
Ada regulatory protein; Identified by match to PFAM protein family HMM PF01035.
     
 0.540
CC_0709
Ada regulatory protein, internal deletion; Identified by match to PFAM protein family HMM PF01035.
     
 0.530
CC_2038
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.527
CC_1283
ATPase, AAA family; Identified by match to protein family HMM.
     
 0.525
CC_3518
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.522
mutM
formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
 
  
 0.440
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.