CC_0838 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Experiments

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[Homology]

Score

CC_0838

ABC transporter, ATP-binding protein; Identified by match to protein family HMM. (250 aa)

Predicted Functional Partners:

CC_0611

0.821

CC_1519

0.791

CC_0837

0.788

CC_3274

0.520

CC_3420

0.519

cysS

0.499

CC_0305

0.491

CC_0839

0.473

ftsY

0.422

rplN

0.411

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0305	CC_0838	CC_0305	CC_0838	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.491
CC_0305	cysS	CC_0305	CC_0460	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	cysteinyl-tRNA synthetase; Identified by match to TIGR protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.404
CC_0611	CC_0838	CC_0611	CC_0838	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.821
CC_0837	CC_0838	CC_0837	CC_0838	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.788
CC_0837	CC_0839	CC_0837	CC_0839	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.473
CC_0838	CC_0305	CC_0838	CC_0305	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.491
CC_0838	CC_0611	CC_0838	CC_0611	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Nitrate ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.821
CC_0838	CC_0837	CC_0838	CC_0837	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.788
CC_0838	CC_0839	CC_0838	CC_0839	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.473
CC_0838	CC_1519	CC_0838	CC_1519	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.791
CC_0838	CC_3274	CC_0838	CC_3274	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.520
CC_0838	CC_3420	CC_0838	CC_3420	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	0.519
CC_0838	cysS	CC_0838	CC_0460	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	cysteinyl-tRNA synthetase; Identified by match to TIGR protein family HMM TIGR00435; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.499
CC_0838	ftsY	CC_0838	CC_3679	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.	0.422
CC_0838	rplN	CC_0838	CC_1258	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.411
CC_0839	CC_0837	CC_0839	CC_0837	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.473
CC_0839	CC_0838	CC_0839	CC_0838	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.473
CC_1519	CC_0838	CC_1519	CC_0838	Hypothetical protein; Identified by Glimmer2; putative.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.791
CC_3274	CC_0838	CC_3274	CC_0838	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.520
CC_3420	CC_0838	CC_3420	CC_0838	ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM.	0.519