STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0846Hypothetical protein; Identified by Glimmer2; putative. (158 aa)    
Predicted Functional Partners:
CC_0847
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.601
sodC
Superoxide dismutase, Cu-Zn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity). May function against extracytoplasmic toxic oxygen species; Belongs to the Cu-Zn superoxide dismutase family.
  
 
 0.544
SdhB
Succinate dehydrogenase, iron-sulfur protein; Identified by match to protein family HMM; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
 
 0.491
CC_2058
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.460
CC_0848
Integral membrane protein; Identified by match to protein family HMM.
       0.449
CC_1639
Identified by match to protein family HMM.
   
 0.432
CC_2072
Identified by match to PFAM protein family HMM PF00850.
    
  0.419
CC_3648
Identified by match to PFAM protein family HMM PF00850.
    
  0.419
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.418
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.410
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.