STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0860Sugar ABC transporter, ATP-binding protein; Identified by match to protein family HMM. (515 aa)    
Predicted Functional Partners:
CC_0859
Sugar ABC transporter, periplasmic sugar-binding protein; Identified by match to protein family HMM.
 
 0.999
CC_0861
Sugar ABC transporter, permease protein; Similar to GB:L10328 SP:P04984 GB:M13169 PID:147514 PID:290600; identified by sequence similarity; putative; Belongs to the binding-protein-dependent transport system permease family.
 0.999
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.680
CC_1298
iolC protein; Identified by match to protein family HMM.
  
  
 0.612
CC_1627
Transcriptional regulator, LacI family; Identified by match to protein family HMM.
 
  
 0.501
CC_1496
Carbohydrate kinase, pfkB family; Identified by match to protein family HMM.
 
  
 0.467
CC_0573
Transcriptional regulator, LacI family; Identified by match to protein family HMM.
 
  
 0.451
CC_0969
Transcriptional regulator, LacI family; Identified by match to protein family HMM.
 
  
 0.435
CC_1753
Transcriptional regulator, LacI family; Identified by match to protein family HMM.
 
  
 0.435
CC_1223
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
  
  
 0.428
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.