STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0884Transcriptional regulator, putative; Identified by match to protein family HMM. (224 aa)    
Predicted Functional Partners:
CC_0783
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.778
CC_0883
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CC_2392
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
     0.773
CC_1776
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
  
     0.772
CC_1420
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.763
CC_0885
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.762
CC_2813
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.741
CC_0986
Transcriptional regulator, GntR family; Identified by match to protein family HMM.
 
  
 0.718
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
    0.526
CC_0220
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.518
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.