Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CC_0889Leucine aminopeptidase-related protein; Identified by match to protein family HMM. (468 aa)    
Predicted Functional Partners:
CC_3357
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.713
CC_0122
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.627
CC_1144
Aminopeptidase, putative; Identified by match to protein family HMM.
  
 
 0.625
CC_0890
Hypothetical protein; Identified by Glimmer2; putative.
       0.613
CC_0476
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.576
ribH1
Riboflavin synthase, beta subunit; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
    0.554
CC_0886
Riboflavin synthase, alpha subunit; Identified by match to TIGR protein family HMM TIGR00187.
  
    0.511
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
       0.511
CC_0885
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.502
CC_0500
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.497
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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