CC_0896 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0896

Identified by match to protein family HMM. (677 aa)

Predicted Functional Partners:

lovK

0.801

CC_0710

0.782

CC_2670

0.776

CC_3396

0.633

CC_2971

0.560

CC_0895

0.548

CC_1850

0.528

CC_3285

0.514

CC_1086

0.482

CC_1338

0.448

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0710	CC_0896	CC_0710	CC_0896	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.782
CC_0710	CC_1086	CC_0710	CC_1086	Hypothetical protein; Identified by Glimmer2; putative.	Sensory box protein; Identified by match to protein family HMM.	0.412
CC_0710	CC_1850	CC_0710	CC_1850	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.995
CC_0710	CC_2670	CC_0710	CC_2670	Hypothetical protein; Identified by Glimmer2; putative.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.614
CC_0710	CC_2971	CC_0710	CC_2971	Hypothetical protein; Identified by Glimmer2; putative.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.607
CC_0710	CC_3285	CC_0710	CC_3285	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.942
CC_0710	CC_3396	CC_0710	CC_3396	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.926
CC_0895	CC_0896	CC_0895	CC_0896	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.548
CC_0896	CC_0710	CC_0896	CC_0710	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.782
CC_0896	CC_0895	CC_0896	CC_0895	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.548
CC_0896	CC_1086	CC_0896	CC_1086	Identified by match to protein family HMM.	Sensory box protein; Identified by match to protein family HMM.	0.482
CC_0896	CC_1338	CC_0896	CC_1338	Identified by match to protein family HMM.	Ammonium transporter; Identified by match to TIGR protein family HMM TIGR00836.	0.448
CC_0896	CC_1850	CC_0896	CC_1850	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.528
CC_0896	CC_2670	CC_0896	CC_2670	Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.776
CC_0896	CC_2971	CC_0896	CC_2971	Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.560
CC_0896	CC_3285	CC_0896	CC_3285	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.514
CC_0896	CC_3396	CC_0896	CC_3396	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.633
CC_0896	lovK	CC_0896	CC_0285	Identified by match to protein family HMM.	LOV histidine kinase LovK; Identified by match to protein family HMM.	0.801
CC_1086	CC_0710	CC_1086	CC_0710	Sensory box protein; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.412
CC_1086	CC_0896	CC_1086	CC_0896	Sensory box protein; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.482