STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0920Conserved hypothetical protein; Identified by Glimmer2; putative. (499 aa)    
Predicted Functional Partners:
CC_2096
Hydrolase, haloacid dehalogenase-like family; Identified by match to PFAM protein family HMM PF00702.
  
    0.692
CC_1149
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.628
CC_1889
Ribonucleotide reductase-related protein; Similar to GP:3402271; identified by sequence similarity; putative.
  
    0.569
CC_3492
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
    0.569
CC_2358
Identified by match to PFAM protein family HMM PF01738.
 
  
 0.566
CC_0919
Transcriptional regulator, TetR family; Identified by match to protein family HMM.
     
 0.527
CC_3419
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.520
CC_1452
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.511
murU
Nucleotidyltransferase family protein; Catalyzes the formation of UDP-N-acetylmuramate (UDP-MurNAc), a crucial precursor of the bacterial peptidoglycan cell wall, from UTP and MurNAc-alpha-1P. Is likely involved in peptidoglycan recycling as part of a cell wall recycling pathway that bypasses de novo biosynthesis of the peptidoglycan precursor UDP-MurNAc. Is able to complement the fosfomycin sensitivity phenotype of a P.putida mutant lacking murU.
 
   
 0.481
CC_3758
Carboxymethylenebutenolidase; Identified by match to PFAM protein family HMM PF01738.
  
  
 0.466
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.