STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0929IS298, transposase OrfB; Similar to GB:X71024 GB:M96454 SP:Q08082 PID:454221; identified by sequence similarity; putative. (85 aa)    
Predicted Functional Partners:
CC_0928
IS298, transposase OrfA; Identified by match to PFAM protein family HMM PF01511.
     0.709
CC_0930
HlyD family secretion protein, putative; Identified by match to protein family HMM; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.474
CC_0931
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.474
lolD1
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.474
CC_1291
IS298, transposase OrfA; Identified by match to PFAM protein family HMM PF01511.
     0.445
CC_3333
IS298, transposase OrfA; Identified by match to PFAM protein family HMM PF01511.
     0.445
CC_3595
IS298, transposase OrfA; Identified by match to PFAM protein family HMM PF01511.
     0.445
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.