CC_0942 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_0942

Identified by match to protein family HMM. (148 aa)

Predicted Functional Partners:

CC_0096

0.884

CC_0770

0.867

CC_1310

0.626

CC_2131

0.621

CC_0943

0.602

CC_0941

0.599

CC_1431

0.585

CC_2049

0.580

CC_3189

0.572

CC_0947

0.564

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0096	CC_0942	Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.884
CC_0770	CC_0942	Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.867
CC_0941	CC_0942	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.599
CC_0941	CC_0943	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.459
CC_0942	CC_0096	Identified by match to protein family HMM.	Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM.	0.884
CC_0942	CC_0770	Identified by match to protein family HMM.	Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM.	0.867
CC_0942	CC_0941	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.599
CC_0942	CC_0943	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.602
CC_0942	CC_0947	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00378.	0.564
CC_0942	CC_1310	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00441.	0.626
CC_0942	CC_1431	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.585
CC_0942	CC_2049	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00441.	0.580
CC_0942	CC_2131	Identified by match to protein family HMM.	Identified by match to PFAM protein family HMM PF00441.	0.621
CC_0942	CC_3189	Identified by match to protein family HMM.	Fatty oxidation complex, alpha subunit; Identified by match to PFAM protein family HMM PF00725.	0.572
CC_0943	CC_0941	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.459
CC_0943	CC_0942	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.602
CC_0947	CC_0942	Identified by match to PFAM protein family HMM PF00378.	Identified by match to protein family HMM.	0.564
CC_0947	CC_1310	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00441.	0.721
CC_0947	CC_2049	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00441.	0.719
CC_0947	CC_2131	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00441.	0.723