STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0946Identified by match to protein family HMM; Belongs to the cytochrome P450 family. (444 aa)    
Predicted Functional Partners:
CC_2394
Vanillate O-demethylase, reductase subunit; Identified by match to protein family HMM.
 0.980
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.895
fdxB
Ferredoxin, 2Fe-2S; Identified by match to protein family HMM.
 
 0.847
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.736
CC_2997
Identified by match to protein family HMM; Belongs to the cytochrome P450 family.
  
  
 0.691
CC_0944
Conserved hypothetical protein; Identified by Glimmer2; putative.
 0.653
CC_3525
Ferredoxin reductase; Identified by match to protein family HMM.
 
  
 0.598
CC_0945
Oxidoreductase, GMC family; Identified by match to PFAM protein family HMM PF00732.
  
  
 0.548
CC_1163
Acyl carrier protein, putative; Identified by match to PFAM protein family HMM PF00550.
  
 0.547
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.547
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.