Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0948Hypothetical protein; Identified by Glimmer2; putative. (360 aa)    
Predicted Functional Partners:
CC_2323
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.771
hfsA
HfsA; Identified by Glimmer2; putative.
  
     0.767
CC_2071
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.757
hfsF
HfsF; Identified by match to protein family HMM.
  
     0.754
hfsG
Identified by match to protein family HMM.
  
    0.745
hfsC
HfsC; Identified by Glimmer2; putative.
  
     0.718
CC_1244
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.717
hfaB
hfaB protein; Required for the attachment of the holdfast to the cell. May be involved in the positive regulation of hfaC.
  
     0.713
CC_2278
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.693
CC_2938
TPR domain protein; Identified by match to protein family HMM.
  
    0.684
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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