Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0971Tryptophan halogenase, putative; Identified by match to protein family HMM. (510 aa)    
Predicted Functional Partners:
CC_0970
TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.
 
     0.801
CC_0972
Tryptophan halogenase, putative; Identified by match to protein family HMM.
 
   
0.780
CC_1001
Pass1-related protein; Similar to GP:5731277; identified by sequence similarity; putative.
 
     0.769
CC_2287
TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.
 
     0.767
CC_2804
TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.
 
    0.765
CC_0999
TonB-dependent receptor, putative; Similar to GP:9187833; identified by sequence similarity; putative.
 
     0.755
CC_1000
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.753
CC_1754
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.736
CC_0442
TonB-dependent receptor; Identified by match to protein family HMM.
 
     0.708
CC_0571
TonB-dependent receptor; Identified by match to protein family HMM.
 
    0.658
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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