STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0978alpha-L-rhamnosidase, putative; Similar to GP:5763989; identified by sequence similarity; putative. (1027 aa)    
Predicted Functional Partners:
CC_0795
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.774
CC_1422
alpha-L-arabinofuranosidase; Similar to GP:3128391; identified by sequence similarity; putative.
 
   
 0.734
CC_0505
Hypothetical protein; Identified by Glimmer2; putative.
    0.716
CC_2550
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
     0.715
CC_1226
Hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.700
CC_1173
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
   0.689
CC_2357
Beta-xylosidase; Identified by match to protein family HMM.
  
  
 0.665
CC_2313
Hypothetical protein; Identified by Glimmer2; putative.
 
 0.633
CC_0979
Peptidyl-prolyl cis-trans isomerase A; Identified by match to protein family HMM.
  
    0.590
CC_0398
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM.
  
 
 0.561
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.