Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CC_0982Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative. (331 aa)    
Predicted Functional Partners:
CC_0981
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.960
CC_2708
Transcriptional regulator, putative; Similar to SP:P23485 GB:M63115 PID:145931 PID:537133 GB:U00096; identified by sequence similarity; putative.
  
  
 
0.926
CC_2707
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.834
CC_1129
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.831
CC_1778
TonB-dependent receptor; Identified by match to protein family HMM.
 
 
 0.811
CC_1517
TonB-dependent receptor; Identified by match to protein family HMM.
 
 
 0.798
CC_0561
Sigma factor, putative; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.755
CC_0214
TonB-dependent receptor; Identified by match to protein family HMM.
 
  
 0.700
CC_0983
TonB-dependent receptor; Identified by match to protein family HMM.
 
    0.674
CC_3336
TonB-dependent receptor, putative; Identified by match to protein family HMM.
 
  
 0.643
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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