CC_0983 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CC_0983

TonB-dependent receptor; Identified by match to protein family HMM. (1156 aa)

Predicted Functional Partners:

CC_0982

0.674

CC_3336

0.650

CC_1722

0.639

CC_1970

0.637

CC_2257

0.636

CC_2027

0.619

CC_0335

0.563

CC_0442

0.561

CC_0981

0.558

CC_2565

0.543

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0335	CC_0442	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.503
CC_0335	CC_0981	TonB-dependent receptor; Identified by match to protein family HMM.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.405
CC_0335	CC_0982	TonB-dependent receptor; Identified by match to protein family HMM.	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	0.607
CC_0335	CC_0983	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.563
CC_0335	CC_2257	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.691
CC_0442	CC_0335	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.503
CC_0442	CC_0983	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.561
CC_0442	CC_1970	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Similar to GP:9946027; identified by sequence similarity; putative.	0.713
CC_0442	CC_2257	TonB-dependent receptor; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.622
CC_0442	CC_3336	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor, putative; Identified by match to protein family HMM.	0.491
CC_0981	CC_0335	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Identified by match to protein family HMM.	0.405
CC_0981	CC_0982	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	0.960
CC_0981	CC_0983	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	TonB-dependent receptor; Identified by match to protein family HMM.	0.558
CC_0982	CC_0335	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.607
CC_0982	CC_0981	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM; Belongs to the sigma-70 factor family. ECF subfamily.	0.960
CC_0982	CC_0983	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	TonB-dependent receptor; Identified by match to protein family HMM.	0.674
CC_0982	CC_1970	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	TonB-dependent receptor; Similar to GP:9946027; identified by sequence similarity; putative.	0.504
CC_0982	CC_3336	Regulatory protein PupR, putative; Similar to GB:X77918 PID:525260; identified by sequence similarity; putative.	TonB-dependent receptor, putative; Identified by match to protein family HMM.	0.643
CC_0983	CC_0335	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.563
CC_0983	CC_0442	TonB-dependent receptor; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.561