STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_0995TonB-dependent receptor, putative; Identified by Glimmer2; putative. (903 aa)    
Predicted Functional Partners:
CC_2149
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.742
CC_2420
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.737
CC_0171
TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.
  
    0.671
CC_3179
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.664
CC_1520
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.662
CC_3336
TonB-dependent receptor, putative; Identified by match to protein family HMM.
  
    0.651
CC_1295
3-phytase, fusion, putative; Identified by match to protein family HMM.
    0.642
CC_1136
TonB-dependent receptor; Identified by match to protein family HMM.
 
    0.639
CC_1519
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.638
CC_2565
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.635
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.