STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1001Pass1-related protein; Similar to GP:5731277; identified by sequence similarity; putative. (344 aa)    
Predicted Functional Partners:
CC_1000
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.949
CC_1002
Tryptophan halogenase, putative; Similar to GP:5669511; identified by sequence similarity; putative.
 
     0.929
CC_0999
TonB-dependent receptor, putative; Similar to GP:9187833; identified by sequence similarity; putative.
 
     0.897
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.781
CC_2806
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.777
CC_1755
Tryptophan halogenase, putative; Identified by match to protein family HMM.
 
    0.775
CC_2288
Tryptophan halogenase, putative; Similar to GP:5669518; identified by sequence similarity; putative.
 
     0.771
CC_2804
TonB-dependent receptor; Similar to GP:9187833; identified by sequence similarity; putative.
 
     0.771
CC_2807
Tryptophan halogenase, putative; Identified by match to protein family HMM.
 
    0.771
CC_2808
Tryptophan halogenase, putative; Similar to GP:5669511; identified by sequence similarity; putative.
 
    0.771
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.