STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1008RsaA secretion system, ATP-binding protein RsaD; Identified by match to protein family HMM. (578 aa)    
Predicted Functional Partners:
CC_1009
RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM.
  
 0.947
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.892
CC_1439
Cystine ABC transporter, ATP-binding protein, putative; Identified by match to protein family HMM.
 
     
0.839
rsaA
S-layer protein RsaA; The S-layer is a paracrystalline mono-layered assembly of proteins which coats the surface of bacteria. Probably acts as a physical barrier to parasites and lytic enzymes.
 
   
 0.776
CC_2610
Identified by match to PFAM protein family HMM PF00353.
 
 
 0.745
CC_0746
Alkaline metalloproteinase, putative; Identified by match to PFAM protein family HMM PF00353.
 
   
 0.698
CC_1015
Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative.
  
  
 0.473
CC_2423
Type IV secretion system protein B11, putative; Identified by match to protein family HMM.
 
      0.454
CC_0683
Identified by match to protein family HMM.
  
 0.450
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
       0.423
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.