STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1009RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. (436 aa)    
Predicted Functional Partners:
CC_1008
RsaA secretion system, ATP-binding protein RsaD; Identified by match to protein family HMM.
  
 0.947
CC_0684
ABC transporter, HlyB/MsbA family; Identified by match to protein family HMM.
 
 0.874
CC_1015
Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative.
 
 
 0.766
CC_2610
Identified by match to PFAM protein family HMM PF00353.
 
  
 0.753
rsaA
S-layer protein RsaA; The S-layer is a paracrystalline mono-layered assembly of proteins which coats the surface of bacteria. Probably acts as a physical barrier to parasites and lytic enzymes.
 
   
 0.658
CC_0746
Alkaline metalloproteinase, putative; Identified by match to PFAM protein family HMM PF00353.
 
   
 0.652
CC_1318
Outer membrane protein TolC, putative; Similar to SP:P02930 GB:X54049 PID:43101 PID:43107 PID:882565; identified by sequence similarity; putative.
 
 
 0.615
CC_3407
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
    
 0.583
CC_3195
Efflux system protein; Similar to PID:1707646; identified by sequence similarity; putative.
  
 
 0.547
CC_0806
Efflux system protein; Similar to GB:L23839 PID:404773 PID:833173; identified by sequence similarity; putative.
  
 
 0.543
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.