Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CC_1009 | CC_1011 | CC_1009 | CC_1011 | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.497 |
| CC_1009 | CC_1013 | CC_1009 | CC_1013 | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | Glycosyl transferase, group 1 family protein LpsD; Identified by match to protein family HMM. | 0.484 |
| CC_1009 | CC_1014 | CC_1009 | CC_1014 | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | Glycosyl transferase, group 1 family protein LpsE; Identified by match to protein family HMM. | 0.475 |
| CC_1009 | CC_1015 | CC_1009 | CC_1015 | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative. | 0.766 |
| CC_1009 | gmd | CC_1009 | CC_1010 | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. | 0.516 |
| CC_1009 | per | CC_1009 | CC_1012 | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | Perosamine synthetase; Catalyzes the synthesis of GDP-perosamine from GDP-4-keto-6- deoxy-D-mannose and L-glutamate. Can use only L-glutamate as amino donor. In vitro, can also use GDP-4-keto-3,6-dideoxymannose to produce GDP-3-deoxyperosamine. Involved in the formation of S-LPS, which is required for attachment of the protein S-layer to the outer membrane surface. | 0.484 |
| CC_1011 | CC_1009 | CC_1011 | CC_1009 | Identified by match to protein family HMM. | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | 0.497 |
| CC_1011 | CC_1013 | CC_1011 | CC_1013 | Identified by match to protein family HMM. | Glycosyl transferase, group 1 family protein LpsD; Identified by match to protein family HMM. | 0.801 |
| CC_1011 | CC_1014 | CC_1011 | CC_1014 | Identified by match to protein family HMM. | Glycosyl transferase, group 1 family protein LpsE; Identified by match to protein family HMM. | 0.787 |
| CC_1011 | CC_1015 | CC_1011 | CC_1015 | Identified by match to protein family HMM. | Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative. | 0.594 |
| CC_1011 | gmd | CC_1011 | CC_1010 | Identified by match to protein family HMM. | GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. | 0.858 |
| CC_1011 | per | CC_1011 | CC_1012 | Identified by match to protein family HMM. | Perosamine synthetase; Catalyzes the synthesis of GDP-perosamine from GDP-4-keto-6- deoxy-D-mannose and L-glutamate. Can use only L-glutamate as amino donor. In vitro, can also use GDP-4-keto-3,6-dideoxymannose to produce GDP-3-deoxyperosamine. Involved in the formation of S-LPS, which is required for attachment of the protein S-layer to the outer membrane surface. | 0.960 |
| CC_1013 | CC_1009 | CC_1013 | CC_1009 | Glycosyl transferase, group 1 family protein LpsD; Identified by match to protein family HMM. | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | 0.484 |
| CC_1013 | CC_1011 | CC_1013 | CC_1011 | Glycosyl transferase, group 1 family protein LpsD; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.801 |
| CC_1013 | CC_1014 | CC_1013 | CC_1014 | Glycosyl transferase, group 1 family protein LpsD; Identified by match to protein family HMM. | Glycosyl transferase, group 1 family protein LpsE; Identified by match to protein family HMM. | 0.802 |
| CC_1013 | CC_1015 | CC_1013 | CC_1015 | Glycosyl transferase, group 1 family protein LpsD; Identified by match to protein family HMM. | Type I secretion system outer membrane protein RsaF; Similar to GP:6064112; identified by sequence similarity; putative. | 0.596 |
| CC_1013 | gmd | CC_1013 | CC_1010 | Glycosyl transferase, group 1 family protein LpsD; Identified by match to protein family HMM. | GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. | 0.840 |
| CC_1013 | per | CC_1013 | CC_1012 | Glycosyl transferase, group 1 family protein LpsD; Identified by match to protein family HMM. | Perosamine synthetase; Catalyzes the synthesis of GDP-perosamine from GDP-4-keto-6- deoxy-D-mannose and L-glutamate. Can use only L-glutamate as amino donor. In vitro, can also use GDP-4-keto-3,6-dideoxymannose to produce GDP-3-deoxyperosamine. Involved in the formation of S-LPS, which is required for attachment of the protein S-layer to the outer membrane surface. | 0.810 |
| CC_1014 | CC_1009 | CC_1014 | CC_1009 | Glycosyl transferase, group 1 family protein LpsE; Identified by match to protein family HMM. | RsaA secretion system, membrane protein RsaE; Identified by match to protein family HMM. | 0.475 |
| CC_1014 | CC_1011 | CC_1014 | CC_1011 | Glycosyl transferase, group 1 family protein LpsE; Identified by match to protein family HMM. | Identified by match to protein family HMM. | 0.787 |
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