CC_1024 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_1024

Identified by match to protein family HMM. (184 aa)

Predicted Functional Partners:

CC_1023

0.777

CC_2012

0.678

CC_3699

0.639

CC_1053

0.599

CC_1611

0.530

CC_0454

0.527

CC_0224

0.518

CC_1026

0.517

CC_1485

0.511

flaEY

0.504

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0224	CC_1024	CC_0224	CC_1024	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.518
CC_0224	CC_1485	CC_0224	CC_1485	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.754
CC_0224	CC_1611	CC_0224	CC_1611	Hypothetical protein; Identified by Glimmer2; putative.	Membrane protein, putative; Similar to GP:7228154; identified by sequence similarity; putative.	0.429
CC_0224	CC_2012	CC_0224	CC_2012	Hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.612
CC_0224	flaEY	CC_0224	CC_1465	Hypothetical protein; Identified by Glimmer2; putative.	Regulatory protein FlaEY; Functions in trans to modulate the level of transcription of the flagellin genes and several genes encoding chemotaxis functions. It is itself temporally controlled.	0.730
CC_0454	CC_1024	CC_0454	CC_1024	TonB-dependent receptor; Similar to GP:9948370; identified by sequence similarity; putative.	Identified by match to protein family HMM.	0.527
CC_1023	CC_1024	CC_1023	CC_1024	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.777
CC_1024	CC_0224	CC_1024	CC_0224	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.518
CC_1024	CC_0454	CC_1024	CC_0454	Identified by match to protein family HMM.	TonB-dependent receptor; Similar to GP:9948370; identified by sequence similarity; putative.	0.527
CC_1024	CC_1023	CC_1024	CC_1023	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.777
CC_1024	CC_1026	CC_1024	CC_1026	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.517
CC_1024	CC_1053	CC_1024	CC_1053	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.599
CC_1024	CC_1485	CC_1024	CC_1485	Identified by match to protein family HMM.	Conserved hypothetical protein; Identified by Glimmer2; putative.	0.511
CC_1024	CC_1611	CC_1024	CC_1611	Identified by match to protein family HMM.	Membrane protein, putative; Similar to GP:7228154; identified by sequence similarity; putative.	0.530
CC_1024	CC_2012	CC_1024	CC_2012	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.678
CC_1024	CC_3699	CC_1024	CC_3699	Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.639
CC_1024	flaEY	CC_1024	CC_1465	Identified by match to protein family HMM.	Regulatory protein FlaEY; Functions in trans to modulate the level of transcription of the flagellin genes and several genes encoding chemotaxis functions. It is itself temporally controlled.	0.504
CC_1026	CC_1024	CC_1026	CC_1024	Hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.517
CC_1053	CC_1024	CC_1053	CC_1024	Conserved hypothetical protein; Identified by Glimmer2; putative.	Identified by match to protein family HMM.	0.599
CC_1053	CC_2012	CC_1053	CC_2012	Conserved hypothetical protein; Identified by Glimmer2; putative.	Hypothetical protein; Identified by Glimmer2; putative.	0.410