STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1080Transcriptional regulator, LuxR family; Identified by match to protein family HMM. (137 aa)    
Predicted Functional Partners:
CC_1149
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
 
 0.842
CC_1079
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.841
CC_2670
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.836
CC_2971
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.836
CC_1294
Sensor histidine kinase; Identified by match to protein family HMM.
  
 
 0.816
CC_1081
Hypothetical protein; Identified by Glimmer2; putative.
       0.651
CC_0652
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.595
CC_3396
Identified by match to protein family HMM.
  
 
 0.577
CC_2852
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.564
CC_2874
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.
  
 
 0.553
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.