STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1083Acetyltransferase, GNAT family; Identified by match to protein family HMM. (173 aa)    
Predicted Functional Partners:
CC_0213
Acetyltransferase, GNAT family; Identified by match to protein family HMM.
  
     0.654
CC_1082
Hypothetical protein; Identified by Glimmer2; putative.
       0.603
CC_1084
Hypothetical protein; Identified by Glimmer2; putative.
       0.567
CC_1081
Hypothetical protein; Identified by Glimmer2; putative.
       0.501
CC_1080
Transcriptional regulator, LuxR family; Identified by match to protein family HMM.
   
 
 0.474
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.441
CC_1085
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.400
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.