CC_1086 protein (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CC_1086

Sensory box protein; Identified by match to protein family HMM. (547 aa)

Predicted Functional Partners:

CC_3285

0.989

CC_1850

0.923

pleD

0.823

CC_0091

0.663

CC_2971

0.654

CC_2670

0.652

CC_3396

0.582

CC_1842

0.581

CC_3094

0.550

CC_0655

0.545

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0091	CC_0655	CC_0091	CC_0655	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.431
CC_0091	CC_1086	CC_0091	CC_1086	Identified by match to protein family HMM.	Sensory box protein; Identified by match to protein family HMM.	0.663
CC_0091	CC_1842	CC_0091	CC_1842	Identified by match to protein family HMM.	Response regulator, putative; Identified by match to protein family HMM.	0.431
CC_0091	CC_1850	CC_0091	CC_1850	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.600
CC_0091	CC_2670	CC_0091	CC_2670	Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.748
CC_0091	CC_2971	CC_0091	CC_2971	Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.698
CC_0091	CC_3285	CC_0091	CC_3285	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.569
CC_0091	CC_3396	CC_0091	CC_3396	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.752
CC_0655	CC_0091	CC_0655	CC_0091	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.431
CC_0655	CC_1086	CC_0655	CC_1086	Identified by match to protein family HMM.	Sensory box protein; Identified by match to protein family HMM.	0.545
CC_0655	CC_1842	CC_0655	CC_1842	Identified by match to protein family HMM.	Response regulator, putative; Identified by match to protein family HMM.	0.411
CC_0655	CC_1850	CC_0655	CC_1850	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.606
CC_0655	CC_2670	CC_0655	CC_2670	Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.878
CC_0655	CC_2971	CC_0655	CC_2971	Identified by match to protein family HMM.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM.	0.620
CC_0655	CC_3285	CC_0655	CC_3285	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.564
CC_0655	CC_3396	CC_0655	CC_3396	Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.641
CC_1086	CC_0091	CC_1086	CC_0091	Sensory box protein; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.663
CC_1086	CC_0655	CC_1086	CC_0655	Sensory box protein; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.545
CC_1086	CC_1842	CC_1086	CC_1842	Sensory box protein; Identified by match to protein family HMM.	Response regulator, putative; Identified by match to protein family HMM.	0.581
CC_1086	CC_1850	CC_1086	CC_1850	Sensory box protein; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.923