CC_1089 protein (Caulobacter vibrioides CB15)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

CC_1089

Transcriptional regulator, putative; Identified by match to protein family HMM. (160 aa)

Predicted Functional Partners:

CC_1091

0.920

CC_2792

0.803

CC_2793

0.795

CC_1090

0.710

CC_3436

0.655

CC_1092

0.644

CC_1520

0.641

CC_1519

0.634

CC_0722

0.586

CC_2149

0.559

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CC_0722	CC_1089	TonB-dependent receptor; Identified by match to protein family HMM.	Transcriptional regulator, putative; Identified by match to protein family HMM.	0.586
CC_0722	CC_1092	TonB-dependent receptor; Identified by match to protein family HMM.	Acetyltransferase, GNAT family; Identified by match to protein family HMM.	0.496
CC_0722	CC_2792	TonB-dependent receptor; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.528
CC_1089	CC_0722	Transcriptional regulator, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.586
CC_1089	CC_1090	Transcriptional regulator, putative; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.710
CC_1089	CC_1091	Transcriptional regulator, putative; Identified by match to protein family HMM.	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	0.920
CC_1089	CC_1092	Transcriptional regulator, putative; Identified by match to protein family HMM.	Acetyltransferase, GNAT family; Identified by match to protein family HMM.	0.644
CC_1089	CC_1519	Transcriptional regulator, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.634
CC_1089	CC_1520	Transcriptional regulator, putative; Identified by match to protein family HMM.	Hypothetical protein; Identified by Glimmer2; putative.	0.641
CC_1089	CC_2149	Transcriptional regulator, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.559
CC_1089	CC_2792	Transcriptional regulator, putative; Identified by match to protein family HMM.	Identified by match to protein family HMM.	0.803
CC_1089	CC_2793	Transcriptional regulator, putative; Identified by match to protein family HMM.	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	0.795
CC_1089	CC_3436	Transcriptional regulator, putative; Identified by match to protein family HMM.	TonB-dependent receptor; Identified by match to protein family HMM.	0.655
CC_1090	CC_1089	Identified by match to protein family HMM.	Transcriptional regulator, putative; Identified by match to protein family HMM.	0.710
CC_1090	CC_1091	Identified by match to protein family HMM.	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	0.760
CC_1090	CC_1092	Identified by match to protein family HMM.	Acetyltransferase, GNAT family; Identified by match to protein family HMM.	0.406
CC_1091	CC_1089	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	Transcriptional regulator, putative; Identified by match to protein family HMM.	0.920
CC_1091	CC_1090	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	Identified by match to protein family HMM.	0.760
CC_1091	CC_1092	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	Acetyltransferase, GNAT family; Identified by match to protein family HMM.	0.614
CC_1091	CC_2792	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593.	Identified by match to protein family HMM.	0.780