STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CC_1091Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593. (534 aa)    
Predicted Functional Partners:
CC_1089
Transcriptional regulator, putative; Identified by match to protein family HMM.
 
   
 0.920
CC_2792
Identified by match to protein family HMM.
 
   
 0.780
CC_1090
Identified by match to protein family HMM.
 
   
 0.760
CC_2072
Identified by match to PFAM protein family HMM PF00850.
   
 0.638
CC_3648
Identified by match to PFAM protein family HMM PF00850.
   
 0.638
CC_1092
Acetyltransferase, GNAT family; Identified by match to protein family HMM.
 
  
 0.614
CC_1987
Hypothetical protein; Identified by Glimmer2; putative.
   
  
 0.505
CC_3436
TonB-dependent receptor; Identified by match to protein family HMM.
  
     0.457
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
    0.451
CC_3147
TonB-dependent receptor; Identified by match to protein family HMM.
  
    0.451
Your Current Organism:
Caulobacter vibrioides CB15
NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089
Server load: low (16%) [HD]